biomcp1

BioMCP — 50+ Biomedical Databases, One Command.

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What it can do

  • Biomcp: BioMCP is a read-only biomedical MCP tool for search, detail retrieval, discovery, enrichment, and study analytics across leading public biomedical data sources. # BioMCP Command Reference Bio

What data it sees

Do you need an account

No: the server works without sign-in

BioMCP — 50+ Biomedical Databases, One Command. Production-grade read-only biomedical MCP server unifying PubMed, ClinicalTrials.gov, ClinVar, gnomAD, OncoKB, Reactome, KEGG, UniProt, PharmGKB, CPIC, OpenFDA, Monarch Initiative, GWAS Catalog, cBioPortal, FAERS, and more. Supports gene/variant/disease/drug/article/trial/phenotype/pathway/p rotein/GWAS/PGx/adverse-event search, detail retrieval, and enrichment. Use biomcp suggest "" to get started. Apache-2.0 licensed.

How to connect

How to connect biomcp1 to Claude

The server address to paste into Claude settings:

https://biomcp1--gucci10248.run.tools

  1. Open Claude (claude.ai or the desktop app).
  2. Go to Settings → Connectors.
  3. Click Add custom connector.
  4. Paste the server address copied below into Remote MCP server URL and click Add.
  5. In a chat, click + → Connectors and switch the new connector on.

Custom connectors are available on Free, Pro, Max, Team and Enterprise plans (Free is limited to one). On Team and Enterprise an organization Owner adds the connector first under Organization settings → Connectors.

Authorization

After you click Add, a sign-in window for the service opens. Sign in with your own account and approve access. Claude never sees your password.

How to connect biomcp1 to ChatGPT

The server address to paste into ChatGPT settings:

https://biomcp1--gucci10248.run.tools

  1. Open ChatGPT in a browser (chatgpt.com). A Plus, Pro, Business, Enterprise or Edu plan is required.
  2. Turn on developer mode once: Settings → Apps → Advanced settings → Developer mode.
  3. Open Settings → Connectors and click Create.
  4. Fill in the form: Name (anything), Description (one line about what the service does), MCP server URL (copy it below).
  5. Under Authentication choose OAuth if the service requires sign-in, otherwise None. Click Create.
  6. In a new chat open + → Apps/Connectors and enable the connector.

OpenAI has renamed this section before (Connectors → Apps/Plugins). If the label differs, search settings for "developer mode". On Business/Enterprise workspaces an admin must allow custom connectors first.

Authorization

On first use ChatGPT opens the service's sign-in window. Sign in and approve access.

How to connect biomcp1 to Cursor

The server address to paste into Cursor settings:

https://biomcp1--gucci10248.run.tools

Fastest: click Open in Cursor below and confirm the prompt.

Manually:

  1. In Cursor open Settings → Cursor Settings → MCP and click Add new global MCP server.
  2. Paste the JSON copied below into ~/.cursor/mcp.json (per project: .cursor/mcp.json in the repo root).
  3. Save the file. The server appears in the MCP list; authorize it there if asked.

Authorization

If the service needs sign-in, an authorize button appears next to the server in the MCP list.

Server tool list (1)

Raw names from tools/list. Only developers need these.

biomcpBioMCP is a read-only biomedical MCP tool for search, detail retrieval, discovery, enrichment, and study analytics across leading public biomedical data sources. # BioMCP Command Reference BioMCP connects to PubMed, ClinicalTrials.gov, ClinVar, gnomAD, OncoKB, Reactome, KEGG, UniProt, PharmGKB, CPIC, OpenFDA, Monarch Initiative, GWAS Catalog, and more. One command grammar covers all entities. ## Quickstart New to BioMCP? Try: - `suggest "What drugs treat melanoma?"` - choose the worked-example playbook for a question - `get gene BRAF` - look up a gene - `get gene BRCA1 diagnostics` - inspect GTR diagnostic tests for a known gene - `get disease tuberculosis diagnostics` - inspect up to 10 local diagnostic tests for a condition - `search diagnostic --gene BRCA1 --limit 5` - find genetic tests for a known gene - `search diagnostic --disease HIV --source who-ivd --limit 5` - find WHO infectious-disease diagnostics - `get variant "BRAF V600E"` - annotate a variant - `discover "chest pain"` - resolve a single-entity free-text phrase before choosing a typed command - `search trial -c melanoma` - find clinical trials - `search all --gene BRAF --disease melanoma` - cross-entity summary card ## When to Use What | You want to know... | Start with | |---|---| | I have a biomedical question and need the right playbook | `suggest "<question>"` | | How much NIH funded a disease or gene | `get disease <name_or_id> funding` or `get gene <symbol> funding` | | What drugs treat a disease | `search drug --indication "<disease>" --limit 5` | | What diagnostic test exists for a gene or disease | `get gene <symbol> diagnostics`, `get disease <name_or_id> diagnostics`, or `search diagnostic --gene <symbol> --limit 5` | | What the 5-year survival outlook is for a cancer | `get disease <name_or_id> survival` | | Symptoms or phenotypes of a disease | `get disease <name_or_id> phenotypes` | | MedlinePlus clinical-summary rows for a configured disease | `get disease <name_or_id> clinical_